Library for working with OBO Library Ontologies and associations

Navigation

Verified details

These details have been verified by PyPI
Maintainers
Avatar for cmungall from gravatar.com cmungall Avatar for deepakunni3 from gravatar.com deepakunni3 Avatar for dustine32 from gravatar.com dustine32 Avatar for kltm from gravatar.com kltm Avatar for mugitty from gravatar.com mugitty Avatar for smoxon from gravatar.com smoxon

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: BSD License (BSD)
  • Author: Chris Mungall
  • Tags ontology, graph, obo, owl, sparql, networkx, network
Classifiers

Project description

PyPI

ontobio - a python API for working with ontologies and associations

This module provides objects and utility methods for working with ontologies and associations of entities (genes, variants, etc) to ontology classes.

The ontologies and associations can either be local files or provided by remote services (currently the OntoBee SPARQL service for ontologies and a Monarch or GO Golr service for associations).

Documentation

Documentation is on readthedocs

Notebooks

See the Jupyter Notebooks for code examples

Mailing list

Project details

Verified details

These details have been verified by PyPI
Maintainers
Avatar for cmungall from gravatar.com cmungall Avatar for deepakunni3 from gravatar.com deepakunni3 Avatar for dustine32 from gravatar.com dustine32 Avatar for kltm from gravatar.com kltm Avatar for mugitty from gravatar.com mugitty Avatar for smoxon from gravatar.com smoxon

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: BSD License (BSD)
  • Author: Chris Mungall
  • Tags ontology, graph, obo, owl, sparql, networkx, network
Classifiers

Release history Release notifications | RSS feed

2.9.10

2.9.9

2.9.8

2.9.7

2.9.6

2.9.3

2.9.2

2.9.1

2.9.0

2.8.25

2.8.24

2.8.23

2.8.22

2.8.21

2.8.20

2.8.19

2.8.18

2.8.17

2.8.16

2.8.15

2.8.14

2.8.13

2.8.12

2.8.11

2.8.10

2.8.9

2.8.8

2.8.7

2.8.6

2.8.5

2.8.4

2.8.3

2.8.2

2.8.1

2.8.0

2.7.17

2.7.16

2.7.15

2.7.14

2.7.13

2.7.12

2.7.11

2.7.10

2.7.9

2.7.8

2.7.7

2.7.6

2.7.5

2.7.4

2.7.3

2.7.2

2.7.2rc0 pre-release

2.7.1

2.7.0

2.6.4

2.6.3

2.6.2

2.6.1

2.6.0

2.5.1

2.5.0

2.4.1

2.4.0

2.3.0

2.2.0rc0 pre-release

2.1.2

2.1.1

2.1.0

2.0.0

2.0.0rc9 pre-release

2.0.0rc8 pre-release

2.0.0rc7 pre-release

2.0.0rc6 pre-release

2.0.0rc5 pre-release

2.0.0rc4 pre-release

2.0.0rc3 pre-release

2.0.0rc2 pre-release

2.0.0rc1 pre-release

2.0.0rc0 pre-release

1.20.1

1.20.0

1.19.3

1.19.2

1.19.0

1.18.1

1.18.0

1.17.5

1.17.4

1.17.3

1.17.2

1.17.1

1.17.0

1.16.2

1.16.1

1.16.0

1.15.8

1.15.7

1.15.6

1.15.5

1.15.4

1.15.3

1.15.2

1.15.1

1.15.0

1.14.0

1.13.2

1.13.1

1.13.0

1.12.1

1.12.0

1.11.4

1.11.3

1.11.2

1.11.1

1.11.0

1.10.52

1.10.51

1.10.5

1.10.4

1.10.3

1.10.2

1.10.1

1.10.0

1.9.4

1.9.3

1.9.2

1.9.1

1.9.0

1.8.0

1.7.2

1.7.1

1.7.0

1.6.3

1.6.2

1.6.1

1.6.0

1.5.2

1.5.1

1.5.0

1.4.7

1.4.6

1.4.5

1.4.4

1.4.3

1.4.2

This version

1.4.1

1.4.0

1.3.1

1.3.0

1.2.4

1.2.3

1.1.4

1.1.3

1.1.2

1.1.1

1.1.0

1.0.4

1.0.3

1.0.2

1.0.1

1.0.0

0.2.37

0.2.36

0.2.35

0.2.34

0.2.33

0.2.32

0.2.31

0.2.30

0.2.29

0.2.28

0.2.27

0.2.26

0.2.25

0.2.24

0.2.23

0.2.22

0.2.21

0.2.20

0.2.19

0.2.18

0.2.17

0.2.16

0.2.15

0.2.14

0.2.13

0.2.12

0.2.11

0.2.10

0.2.9

0.2.8

0.2.7

0.2.6

0.2.5

0.2.4

0.2.3

0.2.2

0.2.1

0.1.6

0.1.5

0.1.4

0.1.3

0.1.2

0.1.1

0.1.0

0.0.0

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

ontobio-1.4.1.tar.gz (126.4 kB view details)

Uploaded Source

Built Distributions

ontobio-1.4.1-py3.6.egg (165.1 kB view details)

Uploaded Source

ontobio-1.4.1-py3-none-any.whl (169.0 kB view details)

Uploaded Python 3

File details

Details for the file ontobio-1.4.1.tar.gz.

File metadata

  • Download URL: ontobio-1.4.1.tar.gz
  • Upload date:
  • Size: 126.4 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.11.0 pkginfo/1.4.2 requests/2.19.1 setuptools/28.8.0 requests-toolbelt/0.8.0 tqdm/4.25.0 CPython/3.6.4

File hashes

Hashes for ontobio-1.4.1.tar.gz
Algorithm Hash digest
SHA256 6bd6094640fae4cdbefa2b3898168465b3b444d701f0c7607c482ec8e62ae443
MD5 1d69017cd2c7fce04c74a9aceabbd18c
BLAKE2b-256 f7d1be3de142649cbb3821ff89ceb7aec37a5eafb1b55173f88149a9df77c721

See more details on using hashes here.

File details

Details for the file ontobio-1.4.1-py3.6.egg.

File metadata

  • Download URL: ontobio-1.4.1-py3.6.egg
  • Upload date:
  • Size: 165.1 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.11.0 pkginfo/1.4.2 requests/2.19.1 setuptools/28.8.0 requests-toolbelt/0.8.0 tqdm/4.25.0 CPython/3.6.4

File hashes

Hashes for ontobio-1.4.1-py3.6.egg
Algorithm Hash digest
SHA256 f139ab9e79be754a675acdc5907820ec46826550068256de2410e8accdf5e1dc
MD5 def8e374e7af38400814a5e146d87707
BLAKE2b-256 782e40ad14435065dae9357841b0f66c1633c7b5b65de37eb1eb9f6b15e95156

See more details on using hashes here.

File details

Details for the file ontobio-1.4.1-py3-none-any.whl.

File metadata

  • Download URL: ontobio-1.4.1-py3-none-any.whl
  • Upload date:
  • Size: 169.0 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.11.0 pkginfo/1.4.2 requests/2.19.1 setuptools/28.8.0 requests-toolbelt/0.8.0 tqdm/4.25.0 CPython/3.6.4

File hashes

Hashes for ontobio-1.4.1-py3-none-any.whl
Algorithm Hash digest
SHA256 8d9d4f7f5e7845c78b634e1eb1890a48ccd5e7ffddb1a52f5df30a352b0fe6f0
MD5 081d79a8bf44863266c3b23fd3fddd29
BLAKE2b-256 fc3e1f8feacee09c67fc8d0e06d5df4c50123c15d976a35467b8ec31cb041cc2

See more details on using hashes here.

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page