A tool for parsing omics data into a relational database
Project description
parsomics-core
A tool for parsing omics data into a relational database.
Background
The development of the parsomics project (which now includes
parsomics-core,
parsomics-api-server,
parsomics-plugin-interpro,
etc) was driven by the needs of prokaryote metagenomics research, though aims
to be adaptable to other studies within bioinformatics. It was created at the
Brazilian Biorenewables National Laboratory (LNBR)
within the Brazilian Center for Research in Energy and
Materials (CNPEM).
Supported file formats and tools
- FASTA
- GFF
- dRep
- GTDB-Tk
- Interpro
- run_dbCAN
Database schema
The parsomics database is structured as in the Entity-Relationship Diagram below:
You can check out a scalable PDF version of this diagram at assets/schema.pdf.
License
This work is licensed under the terms of the GPLv3.
Copyright
© 2024 Brazilian Center for Research in Energy and Materials (CNPEM)
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file parsomics_core-3.0.1.tar.gz.
File metadata
- Download URL: parsomics_core-3.0.1.tar.gz
- Upload date:
- Size: 43.7 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: poetry/1.8.5 CPython/3.12.8 Linux/6.12.11-200.fc41.x86_64
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
dba289351ea99eb05b79ba400361a2acf637589d997340b0abb198a97a9a55c6
|
|
| MD5 |
96fa0fe474ec116eb56c94ba372dc051
|
|
| BLAKE2b-256 |
247050717e4a0384a5de70cea49531c59adafaeede2221a8fa793d062f16eb8e
|
File details
Details for the file parsomics_core-3.0.1-py3-none-any.whl.
File metadata
- Download URL: parsomics_core-3.0.1-py3-none-any.whl
- Upload date:
- Size: 84.8 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: poetry/1.8.5 CPython/3.12.8 Linux/6.12.11-200.fc41.x86_64
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
3dfd3c5cb2e355b5a074b739425e89eb4ff9b12f1019866b93a63c0f9343af98
|
|
| MD5 |
58a66b66b0c492b29dae04e0b23a7a82
|
|
| BLAKE2b-256 |
80a22cfecde22e74d30a069007f6827cc5d6d308b9ecaac740c9c90c0c1ddff0
|
