A tool for parsing omics data into a relational database
Project description
parsomics-core
A tool for parsing omics data into a relational database.
Background
The development of the parsomics project (which now includes
parsomics-core,
parsomics-api-server,
parsomics-plugin-interpro,
etc) was driven by the needs of prokaryote metagenomics research, though aims
to be adaptable to other studies within bioinformatics. It was created at the
Brazilian Biorenewables National Laboratory (LNBR)
within the Brazilian Center for Research in Energy and
Materials (CNPEM).
Supported file formats and tools
- FASTA
- GFF
- dRep
- GTDB-Tk
- Interpro
- run_dbCAN
Database schema
The parsomics database is structured as in the Entity-Relationship Diagram below:
You can check out a scalable PDF version of this diagram at assets/schema.pdf.
License
This work is licensed under the terms of the GPL-3.0.
Copyright
© 2025 Brazilian Center for Research in Energy and Materials (CNPEM).
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