Patinae Python Bindings
Python bindings for the Rust/WebGPU molecular visualization workspace.
Installation
pip install patinae
Background tasks
Command methods wait for accepted background work by default. Pass wait=False
to receive task IDs immediately, then observe or cancel them through tasks:
from patinae import cmd, tasks
reply = cmd.fetch("1CRN", wait=False)
task_id = reply["task_ids"][0]
snapshot = tasks.get(task_id)
snapshot = tasks.wait(task_id, timeout=30)
tasks.list(**filters) lists retained tasks; tasks.cancel(task_id) requests
cancellation. A wait timeout does not cancel the task.
Jupyter Widget
The package includes an anywidget-based widget for interactive visualization in notebooks. Works in JupyterLab, Jupyter Notebook, VS Code, and Google Colab.
pip install patinae[widget]
from patinae.widget import Viewer
view = Viewer()
view.show()
cmd = view.get_cmd()
cmd.fetch("1CRN")
cmd.show("cartoon")
cmd.color("green", "chain A")
Features:
- Tracked commands — wait by default; use
wait=Falseandview.tasksto observe or cancel background work in this viewer - Synchronous queries — request/response channel for commands that return data
- Local file loading — load structures from the local filesystem into the browser viewer
- Picking support — optional click-to-select atoms (
Viewer(picking=True)) - Configurable layout —
widthandheightparameters with sensible defaults
License
BSD-3-Clause
1 maintainer
Metadata
1 maintainer
Release files for patinae 0.5.0
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Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| patinae-0.5.0.tar.gz | 1.1 MB | Details |
Built distributions (wheels)
Total release size: 206.4 MB
Release files / patinae-0.5.0.tar.gz
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