pdb2af downloads AF2 predictions that overlap with PDB structures
pdb2af uses SIFTS (https://www.ebi.ac.uk/pdbe/docs/sifts/) to download protein structures from the AlphaFold Protein Structure Database that overlap with PDB structures.
pdb2af is installed using pip (https://packaging.python.org/en/latest/tutorials/installing-packages/).
pip install pdb2af
pdb2af reads in a text file with PDB IDs. You need to be connected to the internet.
pdb2af -i pdb_ids.txt
-i text file with list of PDB IDs
-u update the SIFTS mapping between PDB IDs and UniProt accession numbers
Contact Nick Fowler (njfowler.com) for support, queries or suggestions.
Release history Release notifications | RSS feed
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.