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pdb2af downloads AF2 predictions that overlap with PDB structures

Project description

pdb2af v0.0.20

pdb2af uses SIFTS (https://www.ebi.ac.uk/pdbe/docs/sifts/) to download protein structures from the AlphaFold Protein Structure Database that overlap with PDB structures.

Installation

pdb2af is installed using pip (https://packaging.python.org/en/latest/tutorials/installing-packages/).

pip install pdb2af

Running pdb2af

pdb2af reads in a text file with PDB IDs. You need to be connected to the internet.

pdb2af -i pdb_ids.txt

Options:

-i text file with list of PDB IDs

-u update the SIFTS mapping between PDB IDs and UniProt accession numbers

Help

Contact Nick Fowler (njfowler.com) for support, queries or suggestions.

Project details


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