perGENIE is a Web/CUI application for personal genome interpretation. This repository contains the core utils of perGENIE, such as Disease Risk Report.
Quick Start (For non-developers)
Without installation, just download this repository and run:
$ python ./pergenie [command] [options]Usage Examples
To run Disease Risk Report:
$ python ./pergenie riskreport -I example/vcf_whole_genome.vcf \
-F vcf_whole_genome \
-P AsianFor developpers
How to Install
If you are familier with pip:
$ pip install pergenieOr clone this repository, then, install by setup script:
$ python setup.py installHow to run test
$ python setup.py testLicense
Copyright (c) 2012,2013,2014,2015 perGENIE Team <knmkr3gma[at]gmail.com>
perGENIE is licensed under the GNU AGPLv3.0.
CHANGELOG
0.1.0 - Initial release
0.1.1 - Update readme
0.1.2 - Change license to AGPLv3
0.1.3 - Rewrite README.md to .rst
1 maintainer
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