perGENIE is a Web/CUI application for personal genome interpretation. This repository contains the core utils of perGENIE, such as Disease Risk Report.
Quick Start (For non-developers)
Without installation, just download this repository and run:
$ python ./pergenie [command] [options]Usage Examples
To run Disease Risk Report:
$ python ./pergenie riskreport -I example/vcf_whole_genome.vcf \
-F vcf_whole_genome \
-P AsianFor developpers
How to Install
If you are familier with pip:
$ pip install pergenieOr clone this repository, then, install by setup script:
$ python setup.py installHow to run test
$ python setup.py testLicense
Copyright (c) 2012,2013,2014,2015 perGENIE Team <knmkr3gma[at]gmail.com>
perGENIE is licensed under the GNU AGPLv3.0.
CHANGELOG
0.1.0 - Initial release
0.1.1 - Update readme
0.1.2 - Change license to AGPLv3
0.1.3 - Rewrite README.md to .rst
1 maintainer
Metadata
1 maintainer
Release files for pergenie 0.1.4
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| pergenie-0.1.4.tar.gz | 11.3 MB | Without provenance | Details for pergenie-0.1.4.tar.gz |
Release files / pergenie-0.1.4.tar.gz
| Download URL | pergenie-0.1.4.tar.gz |
|---|---|
| Size | 11.3 MB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
de8178b5e36093f9f5bb6cd96ba05ce3634e37b1e85a28bdb8087bd0671e2017
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Uploaded using Trusted Publishing? What is trusted publishing? |
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Security for pergenie 0.1.4
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