pergenie

perGENIE is a Web/CUI application for personal genome interpretation. This repository contains the core utils of perGENIE, such as Disease Risk Report.

Quick Start (For non-developers)

Without installation, just download this repository and run:

$ python ./pergenie [command] [options]

Usage Examples

To run Disease Risk Report:

$ python ./pergenie riskreport -I example/vcf_whole_genome.vcf \
                               -F vcf_whole_genome \
                               -P Asian

For developpers

How to Install

If you are familier with pip:

$ pip install pergenie

Or clone this repository, then, install by setup script:

$ python setup.py install

How to run test

$ python setup.py test

License

perGENIE is licensed under the GNU AGPLv3.0.

AGPLv3

CHANGELOG

0.1.0 - Initial release
0.1.1 - Update readme
0.1.2 - Change license to AGPLv3
0.1.3 - Rewrite README.md to .rst

Release files for pergenie 0.1.4

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

Source distribution (sdist)

Source distribution for pergenie 0.1.4
File	Size	Uploaded
pergenie-0.1.4.tar.gz	11.3 MB	Feb 22, 2016	Details

Release files / pergenie-0.1.4.tar.gz

Download URL	pergenie-0.1.4.tar.gz
Size	11.3 MB
Tags	Source
SHA-256 checksum How to use checksums	`de8178b5e36093f9f5bb6cd96ba05ce3634e37b1e85a28bdb8087bd0671e2017`
BLAKE2b-256 checksum How to use checksums	`dbe896d0a5cd10396022268d8c3dbb755e5ee7acca6847d2c808ae30c4803cd4`
Upload date	Feb 22, 2016
Uploaded using Trusted Publishing? What is trusted publishing?	No