9 files were added to this release more than 14 days after its initial publication. Inspect the release files before installing.
This provides a basic Python API for pgenlib (See python_api.txt for details.)
Build instructions
To build this library you will first need to clone the repository:
# clone repo
git clone https://github.com/chrchang/plink-ng
# go to python folder
cd plink-ng/2.0/Python
Then install Cython and NumPy:
pip3 install "cython>=0.29.21" "numpy>=1.19.0"
and then build and install the package
python3 setup.py build_ext
python3 setup.py install
Example usage:
#write a 2 sample file
import numpy as np
import pgenlib as pg
with pg.PgenWriter("test.pgen".encode("utf-8"), 2, 3, False) as writer:
writer.append_alleles(np.array([0,1,1,1],dtype=np.int32))
writer.append_alleles(np.array([0,1,0,0],dtype=np.int32))
writer.append_alleles(np.array([0,0,0,0],dtype=np.int32))
1 maintainer
Metadata
1 maintainer
Release files for pgenlib 0.82.1
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Files added late
9 files were uploaded more than 14 days after the first file in this release.
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Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| Pgenlib-0.82.1.tar.gz | 489.1 kB | Details |
Built distributions (wheels)
Total release size: 10.3 MB
Release files / Pgenlib-0.82.1.tar.gz
| Download URL | Pgenlib-0.82.1.tar.gz |
|---|---|
| Size | 489.1 kB |
| Tags | Source |
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Release files / Pgenlib-0.82.1-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
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| Download URL | Pgenlib-0.82.1-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl |
|---|---|
| Size | 244.0 kB |
| Tags | Linux glibc 2.17+ x86-64 PyPy 3.9 PyPy 3.9 7.3 |
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| Download URL | Pgenlib-0.82.1-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl |
|---|---|
| Size | 244.9 kB |
| Tags | Linux glibc 2.17+ x86-64 PyPy 3.8 PyPy 3.8 7.3 |
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| Download URL | Pgenlib-0.82.1-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl |
|---|---|
| Size | 248.2 kB |
| Tags | Linux glibc 2.17+ x86-64 PyPy 3.7 PyPy 3.7 7.3 |
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| Download URL | Pgenlib-0.82.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl |
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| Size | 1.5 MB |
| Tags | CPython 3.11 Linux glibc 2.17+ x86-64 |
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| Download URL | Pgenlib-0.82.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl |
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| Size | 1.5 MB |
| Tags | CPython 3.10 Linux glibc 2.17+ x86-64 |
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| Download URL | Pgenlib-0.82.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl |
|---|---|
| Size | 1.5 MB |
| Tags | CPython 3.9 Linux glibc 2.17+ x86-64 |
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| Download URL | Pgenlib-0.82.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl |
|---|---|
| Size | 1.6 MB |
| Tags | CPython 3.8 Linux glibc 2.17+ x86-64 |
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| Download URL | Pgenlib-0.82.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl |
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| Size | 1.5 MB |
| Tags | CPython 3.7 CPython 3.7 pymalloc Linux glibc 2.17+ x86-64 |
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| Download URL | Pgenlib-0.82.1-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl |
|---|---|
| Size | 1.5 MB |
| Tags | CPython 3.6 CPython 3.6 pymalloc Linux glibc 2.17+ x86-64 |
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