Macroevolutionary phenotype predictor
Project description
phenoradar
[!WARNING] This repository is under active development and may change without notice.
Overview
PhenoRadar is a CLI tool for binary phenotype prediction from orthogroup-level TPM.
Install
pip install phenoradar
Fastest Run
Fetch compact test data, materialize default config, then run:
phenoradar dataset
phenoradar config
phenoradar run -c config.yml
Documentation (Recommended Order)
- docs/quickstart.md: first successful run, full run, and prediction.
- docs/data-format.md: required metadata/expression TSV schema.
- docs/configuration.md: config behavior, defaults, and key-by-key definitions.
- docs/cli-reference.md: all commands and options.
- docs/output-artifacts.md: output files, column-level details, and interpretation guidance.
- docs/pipeline-details.md: internal execution behavior.
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