PICSL Image Graph Cut: Graph Partitioning for Binary Image Volumes

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Project description

PICSL Image Graph Cut Tool

This project provides a CLI tool and a Python interface for taking a binary 3D volume (e.g., in NIFTI format or any other readable by ITK) and splitting it into components based on connectivity. The code is a wrapper around the METIS library.

Quick Start (Python)

Install the package:

pip install picsl_image_graph_cut

Download a binary image to experiment with

DATAURL=https://github.com/pyushkevich/greedy/raw/master/testing/data
curl -L $DATAURL/phantom01_mask.nii.gz -o phantom01_mask.nii.gz

Partition the image

from picsl_image_graph_cut import image_graph_cut
help(image_graph_cut)
image_graph_cut('phantom01_mask.nii.gz', 'phantom01_gcut.nii.gz', 5)

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0.0.1

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