Pipeline2App: a tool for quickly turning pipelines into containerised applications (e.g. BIDS Apps or XNAT pipelines)
Project description
Pipeline2App
Pipeline2App is a tool for quickly turning Pydra tasks and workflows into containerised applications (e.g. BIDS Apps or XNAT pipelines)
Documentation
Detailed documentation on Pipeline2App can be found at https://arcanaframework.github.io/pipeline2app
Installation
Pipeline2App can be installed for Python 3 using pip:
python3 -m pip install pipeline2app
This will enable you run basic apps against generic directory trees, however, if you want to build specific apps you will also need to install the appropriate extension package, e.g.
python3 -m pip install pipeline2app-xnat
License
This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License
Acknowledgements
The authors acknowledge the facilities and scientific and technical assistance of the National Imaging Facility, a National Collaborative Research Infrastructure Strategy (NCRIS) capability.
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