plantiSMASH - Plant Specialized Metabolite Analysis Shell
plantiSMASH is a specialized extension of antiSMASH for the identification and analysis of biosynthetic gene clusters (BGCs) in plant genomes. It supports advanced plant-specific detection rules and features for comparative genomics, visualization, and more.
📚 Documentation & Wiki
- 🔍 User documentation: plantismash.github.io/documentation
- 🔧 Installation manual: available in the documentation
- 🧠 Developer & technical wiki: GitHub Wiki
📄 Publications & Citation
If you use plantiSMASH in your work, please cite the relevant antiSMASH and plantiSMASH publications:
- How to cite the antiSMASH suite of tools: antiSMASH citations page
- PlantiSMASH publications:
plantiSMASH: automated identification, annotation and expression analysis of plant biosynthetic gene clusters.
Satria A. Kautsar, Hernando G Suarez Duran, Kai Blin, Anne Osbourn & Marnix H. Medema
Nucleic Acids Research, 45(W1), W55-W63. (2017) https://doi.org/10.1093/nar/gkx305
🔓 License
plantiSMASH is open source software, distributed under the GNU Affero General Public License version 3.0 or later. See the LICENSE.txt file for full terms.
🤝 Contributing
Interested in contributing or reporting bugs? See our contributing guidelines or open an issue on the GitHub Issues page.
✉️ Contact
For questions, suggestions, or collaborations, feel free to contact the maintainers via GitHub or reach out to the plantiSMASH team.
Acknowledgements
Some icons used courtesy of fontawesome.com
1 maintainer
Release files for plantismash 2.0.4
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| plantismash-2.0.4.tar.gz | 19.7 MB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| plantismash-2.0.4-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 40.2 MB
Release files / plantismash-2.0.4.tar.gz
| Download URL | plantismash-2.0.4.tar.gz |
|---|---|
| Size | 19.7 MB |
| Tags | Source |
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Transparency logRelease files / plantismash-2.0.4-py3-none-any.whl
| Download URL | plantismash-2.0.4-py3-none-any.whl |
|---|---|
| Size | 20.5 MB |
| Tags | Python 3 |
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SHA-256 checksum How to use checksums |
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Yes |
| Uploaded via |
twine/6.1.0 CPython/3.13.7
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