Compute minimal metabolic precursors sets that enable the production of target metabolites.
Project description
Installation
You can install precursor by running:
$ pip install --user precursor
On Linux the executable script can then be found in ~/.local/bin
and on MacOS the script is under /Users/YOURUSERNAME/Library/Python/2.7/bin.
Usage
Typical usage is:
$ precursor.py --autoseeds network targets
For more options you can ask for help as follows:
$ precursor.py --help usage: precursor.py [-h] [--autoseeds] net inputs positional arguments: net metabolic network in SBML format inputs targets in XML format optional arguments: -h, --help show this help message and exit --autoseeds compute possible seed metabolites
Samples
An archive with sample files is available here: precursor_data.tar.gz
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