py-lmd 1.5.0

Read, Modify and Create new shape files for the Leica LMD6 & LMD7

Read, create and write cutting data for the Leica LMD6 & LMD7 microscope. Build reproducible workflows to calibrate, import SVG files and convert single-cell segmentation masks.

Installation

The py-lmd library can be installed via pip. py-lmd has been tested with Python 3.9, 3.10, 3.11 and 3.12.

pip install py-lmd

Documentation

The current documentation can be found under https://mannlabs.github.io/py-lmd/html/index.html.

Citing our Work

py-lmd was developed by Georg Wallmann, Sophia Mädler and Niklas Schmacke in the labs of Veit Hornung and Matthias Mann. If you use our code please cite the following manuscript:

SPARCS, a platform for genome-scale CRISPR screening for spatial cellular phenotypes Niklas Arndt Schmacke, Sophia Clara Maedler, Georg Wallmann, Andreas Metousis, Marleen Berouti, Hartmann Harz, Heinrich Leonhardt, Matthias Mann, Veit Hornung bioRxiv 2023.06.01.542416; doi: https://doi.org/10.1101/2023.06.01.542416

Contributing

If you like this software, consider giving us a star to boost our visibility! For detailed guidelines on how to contribute, please refer to our contributing guide.

We welcome all types of contributions! You can:

• Post a new issue if you encounter a bug or have a feature request.
• Clone the repository, create a new branch, and submit a pull request.