PyBEL-OLS 
A PyBEL [1] extension for building BEL resources with the EBI [2] Ontology Lookup Service.
Installation 
Get the Latest
Download the most recent code from GitHub with:
$ pip install git+https://github.com/pybel/pybel-ols.gitFor Developers
Clone the repository from GitHub and install in editable mode with:
$ git clone https://github.com/pybel/pybel-ols.git
$ cd pybel-ols
$ pip install -e .Getting Started
The main goal is to generate a namespace file. For example, to generate a namespace for the Human Phenotype Ontology, abbreviated with the prefix hp, the following command can be used:
$ pybel-ols namespace_from_ols hp --encoding "O" --output ~/Desktop/hp.belnsWhere --encoding "O" tells it that all terms in this ontology correspond to the pathology/phenotype BEL type.
Alternatively, the ‘-b’ option can be used to specify an alternate OLS instance
$ pybel-ols namespace_from_ols hp --encoding O --output ~/Desktop/hp.belns -b https://localhost/olsReferences
1 maintainer
Release files for pybel-ols 0.0.1
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| pybel_ols-0.0.1.tar.gz | 10.4 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| pybel_ols-0.0.1-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 18.6 kB
Release files / pybel_ols-0.0.1.tar.gz
| Download URL | pybel_ols-0.0.1.tar.gz |
|---|---|
| Size | 10.4 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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twine/1.12.1 pkginfo/1.5.0.1 requests/2.21.0 setuptools/40.7.1 requests-toolbelt/0.9.1 tqdm/4.30.0 CPython/3.7.0
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Release files / pybel_ols-0.0.1-py3-none-any.whl
| Download URL | pybel_ols-0.0.1-py3-none-any.whl |
|---|---|
| Size | 8.2 kB |
| Tags | Python 3 |
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twine/1.12.1 pkginfo/1.5.0.1 requests/2.21.0 setuptools/40.7.1 requests-toolbelt/0.9.1 tqdm/4.30.0 CPython/3.7.0
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