Pydra Dcm2Niix Task
This repository contains Pydra task interface for the dcm2niix
DICOM to NIfTI converter tool (https://github.com/rordenlab/dcm2niix).
Part of this effort is to establish a (mostly) declarative language for describing tasks that potentially have intricate rules for determining the availability and names from the choice of inputs.
Installation
pip install /path/to/pydra-dcm2niix/
Installation for developers
pip install -e /path/to/pydra-dcm2niix/[dev]
Basic Use
To run the dcm2niix task
from pydra.tasks.dcm2niix import Dcm2Niix
task = Dcm2Niix(in_dir='/path/to/dicom/dir', out_dir='/path/to/create/nifti/output')
result = task()
However, the converter task interface will typically be used as the first step within larger Pydra workflows
from pydra import Workflow
from pydra.tasks.dcm2niix import Dcm2Niix
my_workflow = Workflow(name='my_workflow', input_spec=['in_dicom'])
my_workflow.add(
Dcm2Niix(name='converter', in_dir=my_workflow.lzin.in_dicom, out_dir='.'))
my_workflow.add(...)
my_workflow()
1 maintainer
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file pydra_tasks_dcm2niix-1.4.tar.gz.
File metadata
- Download URL: pydra_tasks_dcm2niix-1.4.tar.gz
- Upload date:
- Size: 24.9 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via:
twine/6.1.0 CPython/3.9.23
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
f09af70776f11f928bb04dbf651bd3746d3225eba07f5ee6df0b0d8d9701abf5
|
|
| MD5 |
44e0d5bee48c8a4b7440a07eac1b6997
|
|
| BLAKE2b-256 |
1f2298c6777e95b34e85a2d03a7d16aa0039082b911e22823f79bb17a4942bf3
|
File details
Details for the file pydra_tasks_dcm2niix-1.4-py3-none-any.whl.
File metadata
- Download URL: pydra_tasks_dcm2niix-1.4-py3-none-any.whl
- Upload date:
- Size: 7.6 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via:
twine/6.1.0 CPython/3.9.23
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
7d1f79a9b91cf97c1d878c0a013a060a1849f8d059a9ce623d33944cf4f86de8
|
|
| MD5 |
f9df63f78934469597887e1e95db9164
|
|
| BLAKE2b-256 |
4aa08a1955e2ca4f3c53ca092a544a9775265ec0a35591f04cbb20bbf1443e31
|
