Pydra Dcm2Niix Task
This repository contains Pydra task interface for the dcm2niix
DICOM to NIfTI converter tool (https://github.com/rordenlab/dcm2niix).
Part of this effort is to establish a (mostly) declarative language for describing tasks that potentially have intricate rules for determining the availability and names from the choice of inputs.
Installation
pip install /path/to/pydra-dcm2niix/
Installation for developers
pip install -e /path/to/pydra-dcm2niix/[dev]
Basic Use
To run the dcm2niix task
from pydra.tasks.dcm2niix import Dcm2Niix
task = Dcm2Niix(in_dir='/path/to/dicom/dir', out_dir='/path/to/create/nifti/output')
result = task()
However, the converter task interface will typically be used as the first step within larger Pydra workflows
from pydra import Workflow
from pydra.tasks.dcm2niix import Dcm2Niix
my_workflow = Workflow(name='my_workflow', input_spec=['in_dicom'])
my_workflow.add(
Dcm2Niix(name='converter', in_dir=my_workflow.lzin.in_dicom, out_dir='.'))
my_workflow.add(...)
my_workflow()
1 maintainer
Metadata
1 maintainer
Release files for pydra-tasks-dcm2niix 1.4
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| pydra_tasks_dcm2niix-1.4.tar.gz | 24.9 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| pydra_tasks_dcm2niix-1.4-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 32.5 kB
Release files / pydra_tasks_dcm2niix-1.4.tar.gz
| Download URL | pydra_tasks_dcm2niix-1.4.tar.gz |
|---|---|
| Size | 24.9 kB |
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Release files / pydra_tasks_dcm2niix-1.4-py3-none-any.whl
| Download URL | pydra_tasks_dcm2niix-1.4-py3-none-any.whl |
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| Size | 7.6 kB |
| Tags | Python 3 |
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