pyLattice
A python library for advanced lattice light-sheet image analysis
Welcome!
Please read the manual to get started.
Installation
clone or download the repository
pip install pylattice
pip install -r requirements.txt
cd source/jupyter
jupyter notebook
in browser open source/jupyter/latticeFrame_showFrame.ipynb
Test data
A small test data set can be found here: https://www.dropbox.com/sh/s7q45h7wqoco5hl/AAB2Tt5lTGSkF2VhMTMM8NEWa?dl=0
FAQ
Lattice Light-Sheet Microscopy
References
- scikit http://scikit-image.org
- ChimeraX https://www.cgl.ucsf.edu/chimerax/
- llsm tools https://github.com/francois-a/llsmtools
- utrack https://www.utsouthwestern.edu/labs/danuser/software/#utrack_ancs
- Joh Schöneberg http://www.schoeneberglab.org
- The Betzig Lab https://www.janelia.org/lab/betzig-lab
- The Drubin/Barnes Lab https://drubinbarneslab.berkeley.edu
1 maintainer
Metadata
1 maintainer
Release files for pylattice 0.1.3
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| pylattice-0.1.3.tar.gz | 10.3 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| pylattice-0.1.3-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 22.9 kB
Release files / pylattice-0.1.3.tar.gz
| Download URL | pylattice-0.1.3.tar.gz |
|---|---|
| Size | 10.3 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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No |
| Uploaded via |
twine/1.11.0 pkginfo/1.4.2 requests/2.18.4 setuptools/40.0.0 requests-toolbelt/0.8.0 tqdm/4.23.4 CPython/3.6.3
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Release files / pylattice-0.1.3-py3-none-any.whl
| Download URL | pylattice-0.1.3-py3-none-any.whl |
|---|---|
| Size | 12.6 kB |
| Tags | Python 3 |
|
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No |
| Uploaded via |
twine/1.11.0 pkginfo/1.4.2 requests/2.18.4 setuptools/40.0.0 requests-toolbelt/0.8.0 tqdm/4.23.4 CPython/3.6.3
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