A python library for lattice light-sheet image analysis
Project description
pyLattice
A python library for advanced lattice light-sheet image analysis
Welcome!
Please read the manual to get started.
Installation
clone or download the repository
pip install pylattice
pip install -r requirements.txt
cd source/jupyter
jupyter notebook
in browser open source/jupyter/latticeFrame_showFrame.ipynb
Test data
A small test data set can be found here: https://www.dropbox.com/sh/s7q45h7wqoco5hl/AAB2Tt5lTGSkF2VhMTMM8NEWa?dl=0
FAQ
Lattice Light-Sheet Microscopy
References
- scikit http://scikit-image.org
- ChimeraX https://www.cgl.ucsf.edu/chimerax/
- llsm tools https://github.com/francois-a/llsmtools
- utrack https://www.utsouthwestern.edu/labs/danuser/software/#utrack_ancs
- Joh Schöneberg http://www.schoeneberglab.org
- The Betzig Lab https://www.janelia.org/lab/betzig-lab
- The Drubin/Barnes Lab https://drubinbarneslab.berkeley.edu
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file pylattice-0.1.3.tar.gz.
File metadata
- Download URL: pylattice-0.1.3.tar.gz
- Upload date:
- Size: 10.3 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/1.11.0 pkginfo/1.4.2 requests/2.18.4 setuptools/40.0.0 requests-toolbelt/0.8.0 tqdm/4.23.4 CPython/3.6.3
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
96bdc41739b9abdf8344f4f624b41c24ae2e7ef1ed0416b274fbf10cc2894bdb
|
|
| MD5 |
5e8b7f42059b99cf068aaecd4abdf402
|
|
| BLAKE2b-256 |
7113a8a18711c4e3f903f46468351f47084f928ccd5374226b5c0ac64a781301
|
File details
Details for the file pylattice-0.1.3-py3-none-any.whl.
File metadata
- Download URL: pylattice-0.1.3-py3-none-any.whl
- Upload date:
- Size: 12.6 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/1.11.0 pkginfo/1.4.2 requests/2.18.4 setuptools/40.0.0 requests-toolbelt/0.8.0 tqdm/4.23.4 CPython/3.6.3
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
07a1b34f91c3af751b417b6a4617e29fae7afd5c09bf3a4e0bb639f09b0c3a1e
|
|
| MD5 |
50ba234dd6efd2ee58d3907001a4d5c7
|
|
| BLAKE2b-256 |
7037bdd230b37f6e1190e0739ded626909c884a127fcd098b40dac53fd6d9de3
|
