A python library for lattice light-sheet image analysis
Project description
pyLattice
A python library for advanced lattice light-sheet image analysis
Welcome!
Please read the manual to get started.
Installation
clone or download the repository
pip install pylattice
pip install -r requirements.txt
cd source/jupyter
jupyter notebook
in browser open source/jupyter/latticeFrame_showFrame.ipynb
Test data
A small test data set can be found here: https://www.dropbox.com/sh/s7q45h7wqoco5hl/AAB2Tt5lTGSkF2VhMTMM8NEWa?dl=0
FAQ
Lattice Light-Sheet Microscopy
References
- scikit http://scikit-image.org
- ChimeraX https://www.cgl.ucsf.edu/chimerax/
- llsm tools https://github.com/francois-a/llsmtools
- utrack https://www.utsouthwestern.edu/labs/danuser/software/#utrack_ancs
- Joh Schöneberg http://www.schoeneberglab.org
- The Betzig Lab https://www.janelia.org/lab/betzig-lab
- The Drubin/Barnes Lab https://drubinbarneslab.berkeley.edu
Project details
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
pylattice-0.1.2.tar.gz
(9.5 kB
view hashes)
Built Distribution
pylattice-0.1.2-py3-none-any.whl
(16.0 kB
view hashes)
Close
Hashes for pylattice-0.1.2-py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | eb57058947475ba884fd40f6c13f0c2de572bb9a916cd0b3930f3b7ec1389e70 |
|
MD5 | 8583e842a2702e2ba898294b5f3ae67f |
|
BLAKE2b-256 | 883402a5742831879f569f45ef388db529d4204aebd78f6162e6777945a7d2fc |