pymetadata: python utilities for metadata and COMBINE archives
pymetadata is a collection of python utilities for working with metadata in the context of COMBINE standards with documentation available from https://matthiaskoenig.github.io/pymetadata.
Features include
- COMBINE archive support (OMEX)
- annotation classes and helpers
- SBO, KISAO and PBPKO ontology terms with label, definition and synonyms
If you have any questions or issues please open an issue.
How to cite
If you use pymetadata please cite the archived software on Zenodo:
König, M. (2026). pymetadata are python utilities for working with metadata (Version 0.8.2) [Computer software]. Zenodo. https://doi.org/10.5281/zenodo.23555354
@software{konig_pymetadata,
author = {König, Matthias},
title = {pymetadata are python utilities for working with metadata},
year = {2026},
month = oct,
version = {0.8.2},
publisher = {Zenodo},
doi = {10.5281/zenodo.23555354},
url = {https://doi.org/10.5281/zenodo.23555354},
}
License
- Source Code: MIT
- Documentation: CC BY-SA 4.0
Funding
Matthias König is supported and by the German Research Foundation (DFG) within the Research Unit Programme FOR 5151 "QuaLiPerF (Quantifying Liver Perfusion-Function Relationship in Complex Resection - A Systems Medicine Approach)" by grant number 436883643 and by grant number 465194077 (Priority Programme SPP 2311, Subproject SimLivA).
Matthias König was supported by the Federal Ministry of Education and Research (BMBF, Germany) within the research network Systems Medicine of the Liver (LiSyM, grant number 031L0054).
© 2021-2026 Matthias König, https://livermetabolism.com
1 maintainer
Metadata
1 maintainer
Release files for pymetadata 0.8.3
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| pymetadata-0.8.3.tar.gz | 5.9 MB | With provenance | Details for pymetadata-0.8.3.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| pymetadata-0.8.3-py3-none-any.whl | Python 3 | none | any | Details for pymetadata-0.8.3-py3-none-any.whl |
Total release size: 6.2 MB
Release files / pymetadata-0.8.3.tar.gz
| Download URL | pymetadata-0.8.3.tar.gz |
|---|---|
| Size | 5.9 MB |
| Tags | Source |
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SHA-256 checksum How to use checksums |
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Transparency logRelease files / pymetadata-0.8.3-py3-none-any.whl
| Download URL | pymetadata-0.8.3-py3-none-any.whl |
|---|---|
| Size | 332.5 kB |
| Tags | Python 3 |
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SHA-256 checksum How to use checksums |
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Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
twine/7.0.0 CPython/3.13.16
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Provenance
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Full provenance
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Signed by GitHub Actions, verified by PyPI on Nov 1, 2026.
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