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The Python Nearest Alignment Space Termination tool

Project description

The official PyNAST source code repository. For documentation on installing and using PyNAST, see This documentation will refer to the latest release version of PyNAST. If you’re working with a development version of PyNAST, you should refer to the documentation in PyNAST/doc/.

See the [QIIME GitHub organization]( for related software projects and data.

Stay up-to-date on PyNAST news

Subscribing to the [QIIME blog]( is the best way to keep up-to-date on news related to PyNAST. You can subscribe via RSS or e-mail on the front page of the blog. This is a very low traffic list, with currently around one e-mail per month or less.

The QIIME blog is the primary means by which we will communicate information on bugs, new releases, and news to our users, so we highly recommend subscribing. We won’t share subscriber information with anyone ever.

Citing PyNAST

If you make use of [PyNAST]( in published work, please cite:

PyNAST: a flexible tool for aligning sequences to a template alignment. J. Gregory Caporaso, Kyle Bittinger, Frederic D. Bushman, Todd Z. DeSantis, Gary L. Andersen, and Rob Knight. January 15, 2010, DOI 10.1093/bioinformatics/btp636. Bioinformatics 26: 266-267.

Need help?

Requests for help with PyNAST should be directed to the [QIIME Forum](

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