Generate and work with GA4GH phenopackets

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License: MIT License (MIT License Copyright (c) 2023, The Monarch Initiative Permission is hereby granted, free of charg...)

Author: Peter Robinson

Tags Global Alliance for Genomics and Health, GA4GH Phenopacket Schema, Human Phenotype Ontology, GA4GH, HPO

Requires: Python >=3.8

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Project description

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pyphetools

Python Phenopacket Tools

This package currently is designed to test how to use the Python version of the phenopackets package together with pandas to create phenopackets from typical supplemental tables.

Development goals include making builder code similar to the Java package to create valid phenopackets and to perform JSON Schema-based validation.

Documentation

See the tutorial and detailed documentation here.

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We have made the package available in the Python Package Index (pypi) at pyphetools.

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Avatar for ielis from gravatar.com ielis Avatar for pnrobinson from gravatar.com pnrobinson

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License: MIT License (MIT License Copyright (c) 2023, The Monarch Initiative Permission is hereby granted, free of charg...)

Author: Peter Robinson

Tags Global Alliance for Genomics and Health, GA4GH Phenopacket Schema, Human Phenotype Ontology, GA4GH, HPO

Requires: Python >=3.8

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