17 projects
gpsea
Discover genotype-phenotype correlations with GA4GH phenopackets
phenopacket-store-toolkit
Collection of GA4GH Phenopackets
phenosentry
A tool and library for quality control and validation of GA4GH Phenopackets.
stairval
Validation framework for hierarchical data structures
pyphetools
Generate and work with GA4GH phenopackets
phenopackets
Phenopacket Schema
hpo-toolkit
A toolkit for working with Human Phenotype Ontology in Python
delumps
Rust extension module for Scone semantic similarity library
ddconst
Constants used across multiple codebases
ga4gh-phenopacket-core
Python convenience wrappers for Phenopacket Schema
c2s2-standard
Consensus clustering for a number of individuals with HPO terms or phenopackets.
c2s2
Consensus clustering for a number of individuals with HPO terms or phenopackets.
ddplt
A package with code from my ML projects that has a potential of being reusable
ddgen
Library of Python utilities that I needed so many times
ddalg
Algorithms and data structures for my Python projects
travail
Pipeline for processing samples in context of rare mendelian diseases
pbga
Library of Python utilities for PacBio Genomes Analysis
