Travail

Pipeline for processing samples in context of rare mendelian diseases.

How to install

Travail is a Python package that is hosted on PyPi and is meant to be used within a virtual environment, such as Anaconda.

To install travail into new Anaconda virtual environment named travail-env, run

# create the virtual environment
conda create -n travail-env python=3.7

# activate the environment after successful creation
conda activate travail-env

# install travail
pip install travail

How to run

After installation, travail executable should be available in your $PATH, when the travail-env is activated.

Run

travail --help

to see all the available options.

Check requirements

TODO - write text about the check requirements functionality