pyppl_jobtime

Job running time statistics for PyPPL.

Installation

Require R and ggplot2.

pip install pyppl_jobtime

After this plugin is installed, a file named job.time will be created in each job directory with running time in seconds saved in it.

Plotting the running time profile

pyppl jobtime --proc pVcfFix --outfile profile.png

• Using violin plot:

  pyppl jobtime --proc pVcfFix --outfile violin.png --plottype violin
  

  

• Changing process names:

  pyppl jobtime --outfile procnames.png \
      --proc pVcfFix --ggs.scale_x_discrete:dict \
      --ggs.scale_x_discrete.labels:list A B C