A fast and efficient bioinformatics library for genomic data processing
Project description
Pyrion
Pyrion is a lightweight toolkit for comparative genomics focused on fast, reliable manipulation of genome annotations and alignments.
It provides efficient abstractions for genomic intervals, genome alignment chains, and sequence access, supporting formats such as BED, chain, 2bit, FASTA, genePred, and GTF.
Development plans and open tasks are tracked in the issue tracker.
Installation
pip install pyrion
Quick Start
See demo.ipynb for quick examples.
For a more advanced practical example, pls see TOGA_mini repo.
API Reference
See API_REFERENCE.md for the complete API documentation.
License
MIT License - see LICENSE file for details.
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