Pyrion
Pyrion is a lightweight toolkit for comparative genomics focused on fast, reliable manipulation of genome annotations and alignments.
It provides efficient abstractions for genomic intervals, genome alignment chains, and sequence access, supporting formats such as BED, chain, 2bit, FASTA, genePred, and GTF.
Development plans and open tasks are tracked in the issue tracker.
Installation
pip install pyrion
Quick Start
See demo.ipynb for quick examples.
For a more advanced practical example, pls see TOGA_mini repo.
API Reference
See API_REFERENCE.md for the complete API documentation.
License
MIT License - see LICENSE file for details.
1 maintainer
Metadata
1 maintainer
Release files for pyrion 0.4.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| pyrion-0.4.0.tar.gz | 191.7 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| pyrion-0.4.0-cp314-cp314-macosx_11_0_arm64.whl | CPython 3.14 | CPython 3.14 | macOS 11.0+ ARM64 | Details |
Total release size: 326.2 kB
Release files / pyrion-0.4.0.tar.gz
| Download URL | pyrion-0.4.0.tar.gz |
|---|---|
| Size | 191.7 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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twine/6.2.0 CPython/3.13.12
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Release files / pyrion-0.4.0-cp314-cp314-macosx_11_0_arm64.whl
| Download URL | pyrion-0.4.0-cp314-cp314-macosx_11_0_arm64.whl |
|---|---|
| Size | 134.5 kB |
| Tags | CPython 3.14 macOS 11.0+ ARM64 |
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SHA-256 checksum How to use checksums |
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No |
| Uploaded via |
twine/6.2.0 CPython/3.13.12
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