A fast and efficient bioinformatics library for genomic data processing
Project description
Pyrion
Tools and abstractions for comparative genomics. Reliable, fast, and minimal-dependency tools for common genomics tasks without unnecessary overhead.
Pyrion includes tools for manipulating genomic intervals, genome alignments, and sequences. It handles common formats like BED (6 or 12), chain, 2bit, and FASTA, and can also parse genePred and GTF annotations.
Work in progress: plans.
Installation
pip install pyrion
Quick Start
See demo.ipynb for quick examples.
For a more advanced practical example, pls see TOGA_mini repo.
API Reference
See API_REFERENCE.md for the complete API documentation.
License
MIT License - see LICENSE file for details.
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