A framework for proteomics data analysis.
What is Pyteomics?
Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provides a growing set of modules to facilitate the most common tasks in proteomics data analysis, such as:
- calculation of basic physico-chemical properties of polypeptides:
- mass and isotopic distribution
- charge and pI
- chromatographic retention time
- access to common proteomics data:
- MS or LC-MS data
- FASTA databases
- search engines output
- easy manipulation of sequences of modified peptides and proteins
The goal of the Pyteomics project is to provide a versatile, reliable and well-documented set of open tools for the wide proteomics community. One of the project’s key features is Python itself, a open source language increasingly popular in scientific programming. The main applications of the library are reproducible statistical data analysis and rapid software prototyping.
- Pyteomics is hosted at the following sites:
Pyteomics uses the following python packages:
The preferred way to obtain pyteomics.biolccc is via pip Python package manager. The shell code for a freshly installed Ubuntu system:
sudo apt-get install python-setuptools python-dev build-essential sudo easy_install pip sudo pip install lxml numpy matplotlib pyteomics
Download pre-compiled binary packages for Pyteomics dependencies:
Download a pre-compiled binary Pyteomics package from the list below.
If you have Enthought Python Distribution / ActivePython, execute in the command line:
easy_install pip pip install lxml numpy matplotlib pyteomics
Release history Release notifications
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|Filename, size & hash SHA256 hash help||File type||Python version||Upload date|
|pyteomics-1.0.0.tar.gz (33.9 kB) Copy SHA256 hash SHA256||Source||None|
|pyteomics-1.0.0.win32-py2.6.exe (231.9 kB) Copy SHA256 hash SHA256||Windows Installer||2.6|
|pyteomics-1.0.0.win32-py2.7.exe (231.9 kB) Copy SHA256 hash SHA256||Windows Installer||2.7|
|pyteomics-1.0.0.win-amd64-py2.6.exe (259.6 kB) Copy SHA256 hash SHA256||Windows Installer||2.6|
|pyteomics-1.0.0.win-amd64-py2.7.exe (259.6 kB) Copy SHA256 hash SHA256||Windows Installer||2.7|