Analyzing microbiome abundance data to infer deep structures
Project description
===============
Qbiome
===============
.. figure:: https://img.shields.io/pypi/dm/qbiome.svg
:alt: qbiome PyPI Downloads
.. figure:: https://img.shields.io/pypi/v/qbiome.svg
:alt: qbiome curent version
.. image:: http://zed.uchicago.edu/logo/qbiome.png
:height: 300px
:scale: 30 %
:alt: qbiome logo
:align: center
.. class:: no-web no-pdf
:Info: Draft link will be posted here
:Author: ZeD@UChicago <zed.uchicago.edu>
:Description: Application of quasinets (https://pypi.org/project/quasinet/) for microbiome analysis for learning rules of organization, maturation, competition and succession in microbiome ecosystems.
:Documentation: https://zeroknowledgediscovery.github.io/qbiome/qbiome/index.html
**Usage:**
.. code-block::
import qbiome
from qbiome.data_formatter import DataFormatter
from qbiome.quantizer import Quantizer
from qbiome.qnet_orchestrator import QnetOrchestrator
from qbiome.forecaster import Forecaster
.. image:: https://github.com/zeroknowledgediscovery/qbiome/raw/main/images/img2.png
:scale: 50 %
:alt: alternate text
:align: center
Qbiome
===============
.. figure:: https://img.shields.io/pypi/dm/qbiome.svg
:alt: qbiome PyPI Downloads
.. figure:: https://img.shields.io/pypi/v/qbiome.svg
:alt: qbiome curent version
.. image:: http://zed.uchicago.edu/logo/qbiome.png
:height: 300px
:scale: 30 %
:alt: qbiome logo
:align: center
.. class:: no-web no-pdf
:Info: Draft link will be posted here
:Author: ZeD@UChicago <zed.uchicago.edu>
:Description: Application of quasinets (https://pypi.org/project/quasinet/) for microbiome analysis for learning rules of organization, maturation, competition and succession in microbiome ecosystems.
:Documentation: https://zeroknowledgediscovery.github.io/qbiome/qbiome/index.html
**Usage:**
.. code-block::
import qbiome
from qbiome.data_formatter import DataFormatter
from qbiome.quantizer import Quantizer
from qbiome.qnet_orchestrator import QnetOrchestrator
from qbiome.forecaster import Forecaster
.. image:: https://github.com/zeroknowledgediscovery/qbiome/raw/main/images/img2.png
:scale: 50 %
:alt: alternate text
:align: center
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