query_phenomizer
A small module for querying the phenomizer tool with HPO-terms.
INFO!!!
From 16/2-16 phenomizer demands a password and username when using the service in this way. Request login credentials from sebastian.koehler@charite.de
Installation
pip install query_phenomizer
or
git clone https://github.com/moonso/query_phenomizer.git
cd query_phenomizer
pip install --editable .
##Usage##
query_phenomizer HP:0001623 HP:0002465 --output phenitypes.txt
User can check if hpo terms exist by using the flag -c/--check_terms.
query_phenomizer HP:0001623 HP:02345555 --check_terms -v
Prints that HP:02345555 does not exist.
For more info run
query_phenomizer --help
Release files for query-phenomizer 1.2.1
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| query_phenomizer-1.2.1.tar.gz | 7.3 kB | Without provenance | Details for query_phenomizer-1.2.1.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| query_phenomizer-1.2.1-py2.py3-none-any.whl | Python 2, Python 3 | none | any | Details for query_phenomizer-1.2.1-py2.py3-none-any.whl |
Total release size: 14.4 kB
Release files / query_phenomizer-1.2.1.tar.gz
| Download URL | query_phenomizer-1.2.1.tar.gz |
|---|---|
| Size | 7.3 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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|
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/4.0.2 CPython/3.11.5
|
Release files / query_phenomizer-1.2.1-py2.py3-none-any.whl
| Download URL | query_phenomizer-1.2.1-py2.py3-none-any.whl |
|---|---|
| Size | 7.1 kB |
| Tags | Python 2 Python 3 |
|
SHA-256 checksum How to use checksums |
403d66f71c1cb345f61d52865637a91ac1348b7929422c0feb1fff32f163e11d
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BLAKE2b-256 checksum How to use checksums |
d679408132ee652fa18b47d2b3252e0980d5b231b3397fc7397a40dfec2b91a2
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/4.0.2 CPython/3.11.5
|
Security for query-phenomizer 1.2.1
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