Tool for query and parsing the phenomizer tool
Project description
query_phenomizer
A small module for querying the phenomizer tool with HPO-terms.
INFO!!!
From 16/2-16 phenomizer demands a password and username when using the service in this way. Request login credentials from sebastian.koehler@charite.de
Installation
pip install query_phenomizer
or
git clone https://github.com/moonso/query_phenomizer.git
cd query_phenomizer
pip install --editable .
##Usage##
query_phenomizer HP:0001623 HP:0002465 --output phenitypes.txt
User can check if hpo terms exist by using the flag -c/--check_terms.
query_phenomizer HP:0001623 HP:02345555 --check_terms -v
Prints that HP:02345555 does not exist.
For more info run
query_phenomizer --help
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