Quickshear Defacing for Neuroimages
Quickshear uses a skull stripped version of an anatomical images as a reference to deface the unaltered anatomical image.
quickshear.py [-h] anat_file mask_file defaced_file [buffer] Quickshear defacing for neuroimages positional arguments: anat_file filename of neuroimage to deface mask_file filename of brain mask defaced_file filename of defaced output image buffer buffer size (in voxels) between shearing plane and the brain (default: 10.0) optional arguments: -h, --help show this help message and exit
For a full description, see the following paper:
Schimke, Nakeisha, and John Hale. “Quickshear defacing for neuroimages.” Proceedings of the 2nd USENIX conference on Health security and privacy. USENIX Association, 2011.
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