radtract 0.1.3

Radiomics Tractometry for advanced along-tract analysis of diffusion MRI

Radiomic Tractometry (RadTract)

Copyright © German Cancer Research Center (DKFZ), Division of Medical Image Computing (MIC). Please make sure that your usage of this code is in compliance with the code license.

Overview

Python package for radiomic tractometry (RadTract), a method for the extraction of radiomics features along white matter tracts.

Installation

Requirements

• No specific hardware requirements. A state-of-the-art desktop computer should be sufficient.
• Tested on Ubuntu 22.04 but should run on other systems as well.
• Tested with Python 3.8 and higher
• Numpy should be installed prior to the RadTract setup, all other dependencies will be installed automatically.
• It is recommended to use a virtual environment for the installation.

See .gitlab-ci.yml for the currently tested configurations.

Installation

• Install from source: navigate to the root directory of RadTract and run pip install .
• Install from PyPI: run pip install radtract

Installation should complete within a few seconds.

Example usage

See tests\test_radtract.py for examples of how to use RadTract. Test data is included in tests\test_data.

Expected runtimes

All tests should complete within a couple of minutes on a standard desktop computer.