running single cell analysis on Nvidia GPUs
Project description
rapids-singlecell: GPU-Accelerated Single-Cell Analysis within scverse®
rapids-singlecell provides GPU-accelerated single-cell analysis with an AnnData-first API. It is largely compatible with Scanpy and includes selected functionality from Squidpy, decoupler, and pertpy. Computations use CuPy and NVIDIA RAPIDS for performance on large datasets.
- GPU acceleration: Common single-cell workflows on
AnnDatarun on the GPU. - Ecosystem compatibility: Works with Scanpy APIs; includes pieces from Squidpy, decoupler, and pertpy.
- Simple installation: Available via Conda and PyPI.
Documentation
For more information please have a look through the documentation
Citation
If you use this tool, please cite:
Please cite the relevant tools if used: decoupler for decoupler functions, squidpy for spatial analysis, and pertpy for perturbation analysis.
rapids-singlecell is part of the scverse® project (website, governance) and is fiscally sponsored by NumFOCUS. If you like scverse® and want to support our mission, please consider making a tax-deductible donation to help the project pay for developer time, professional services, travel, workshops, and a variety of other needs.
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
File details
Details for the file rapids_singlecell-0.16.0rc1.tar.gz.
File metadata
- Download URL: rapids_singlecell-0.16.0rc1.tar.gz
- Upload date:
- Size: 2.2 MB
- Tags: Source
- Uploaded using Trusted Publishing? Yes
- Uploaded via: twine/6.1.0 CPython/3.13.12
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
355019c71ce1581b6e8d5d27eb25d4f3482b9aef38abb9a3b8abace1ccfd4932
|
|
| MD5 |
3f0eb817e117e4044f0c521d4d736536
|
|
| BLAKE2b-256 |
8e40c0f5eebf58216ee6beae2d39531d29de8990986188cf1347aab6ffb51714
|
Provenance
The following attestation bundles were made for rapids_singlecell-0.16.0rc1.tar.gz:
Publisher:
publish.yml on scverse/rapids-singlecell
-
Statement:
-
Statement type:
https://in-toto.io/Statement/v1 -
Predicate type:
https://docs.pypi.org/attestations/publish/v1 -
Subject name:
rapids_singlecell-0.16.0rc1.tar.gz -
Subject digest:
355019c71ce1581b6e8d5d27eb25d4f3482b9aef38abb9a3b8abace1ccfd4932 - Sigstore transparency entry: 2008241040
- Sigstore integration time:
-
Permalink:
scverse/rapids-singlecell@87470ae230ed828d602a57ae5e912754db24d573 -
Branch / Tag:
refs/tags/v0.16.0rc1 - Owner: https://github.com/scverse
-
Access:
public
-
Token Issuer:
https://token.actions.githubusercontent.com -
Runner Environment:
github-hosted -
Publication workflow:
publish.yml@87470ae230ed828d602a57ae5e912754db24d573 -
Trigger Event:
release
-
Statement type:
