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Python client for Reactome content and analysis service API calls.

Project description

Reactome2py

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Python client for Reactome content and analysis services API calls.

Installation

  • PyPI install using pip reactome2py from PyPI
    (sudo) pip install reactome2py 
    
  • from source
    git clone repo
    cd reactome2py
    python setup.py install 
    
  • Dockerfile
    (sudo) docker build -t <tag-name>:latest
    (sudo) docker run -t -i --rm <tag-name>:latest
    

reactome2py Jupyter notebook use-case examples

demo folder holds jupyter notebooks to show use-cases:

API Documentation and json structures (Model section)

Reactome Pathway Browser Tour

This video is useful in understanding how to fully use and interpret Reactome pathway browser features.
https://www.youtube.com/watch?v=-skixrvI4nU

In depth user guides are available at: https://reactome.org/userguide

Project details


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Files for reactome2py, version 0.0.3
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