Reconstruct ancient pedigrees.
Project description
repare is a Python package for (ancient) pedigree reconstruction.
Installation
Recommended
conda create -n "repare" -c conda-forge python=3.13 pygraphviz
conda activate repare
pip install repare
repare uses PyGraphviz to plot reconstructed pedigrees. Since PyGraphviz relies on Graphviz which cannot be installed using pip, we recommend installing repare and its dependencies in a fresh conda environment.
If you don't need to plot reconstructed pedigrees, you can install repare directly with pip install repare. If you need to plot reconstructed pedigrees and have your own Graphviz installation, you can install repare and Pygraphviz with pip install repare[plot].
To install conda, see this page. To install PyGraphviz and Graphviz (yourself), see this page.
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