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Resolwe SDK for Python

Project description

Build Status Documentation Status Version on PyPI Supported Python versions Number of downloads from PyPI

The Resolwe SDK for Python supports writing tools for Resolwe dataflow package for Django framework and Resolwe Bioinformatics that includes the bioinformatics pipelines.

Docs & Help

Read detailed description in the documentation.


To install, run:

pip install resdk

To install for development, run:

pip install -e .[docs,package,test]


Connect to the Resolwe server:

from resdk import Resolwe
re = Resolwe('', 'my_password', '')

Get all collections and select the first one:

collections = re.collections()
collection = list(collections.values())[0]

Get expression objects and select the first one:

expressions ='data:expression:')
expression = expressions[0]

Print annotation:


Print file fields:


Download file:

filename = expression.annotation['output.exp']['value']['file']
file_stream ='output.exp')
with open(filename, 'w') as f:
    for part in file_stream:

Project details

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Files for resdk, version 1.3.0
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Filename, size resdk-1.3.0-py2.py3-none-any.whl (33.4 kB) File type Wheel Python version py2.py3 Upload date Hashes View hashes
Filename, size resdk-1.3.0.tar.gz (34.9 kB) File type Source Python version None Upload date Hashes View hashes

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