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Bioinformatics pipelines for the Resolwe platform

Project Description

Bioinformatics pipelines for the Resolwe dataflow package for Django framework.

Docs & Help

Read about getting started and how to write processes in the documentation.

To chat with developers or ask for help, join us on Slack.

Install

Prerequisites

Make sure you have Python (3.4 or 3.5) installed on your system. If you don’t have it yet, follow these instructions.

Resolwe requires PostgreSQL (9.4+). Many Linux distributions already include the required version of PostgreSQL (e.g. Fedora 22+, Debian 8+, Ubuntu 15.04+) and you can simply install it via distribution’s package manager. Otherwise, follow these instructions.

Additionally, installing some (indirect) dependencies from PyPI will require having a C compiler (e.g. GCC) as well as Python development files installed on the system.

Note

The preferred way to install the C compiler and Python development files is to use your distribution’s packages, if they exist. For example, on a Fedora/RHEL-based system, that would mean installing gcc and python3-devel packages.

Using PyPI

pip install resolwe-bio

To install a pre-release, use:

pip install --pre resolwe-bio

Using source on GitHub

pip install --pre https://github.com/genialis/resolwe-bio/archive/<git-tree-ish>.tar.gz

where <git-tree-ish> can represent any commit SHA, branch name, tag name, etc. in Resolwe Bioinformatics’ GitHub repository. For example, to install the latest Resolwe Bioinformatics from the master branch, use:

pip install --pre https://github.com/genialis/resolwe-bio/archive/master.tar.gz

Contribute

We welcome new contributors. To learn more, read Contributing section of the documentation.

Release History

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7.0.0a2

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7.0.0a1

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6.2.2a1

This version
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6.2.1

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6.2.1a2

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6.2.1a1

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6.2.0

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6.2.0a2

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6.2.0a1

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6.1.0

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6.1.0a1

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6.0.0

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6.0.0a1

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5.1.0a2

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5.1.0a1

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5.0.1

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5.0.0

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4.2.0

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4.2.0a1

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4.1.0

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4.1.0a1

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4.0.0

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3.2.0

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3.1.0

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3.0.0

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2.0.0

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1.4.1

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1.4.0

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1.3.0

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1.2.1

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1.2.0

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1.1.0

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1.0.0

Download Files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

File Name & Hash SHA256 Hash Help Version File Type Upload Date
resolwe_bio-6.2.1-py3-none-any.whl
(332.2 kB) Copy SHA256 Hash SHA256
py3 Wheel Jan 29, 2018
resolwe-bio-6.2.1.tar.gz
(10.3 MB) Copy SHA256 Hash SHA256
Source Jan 29, 2018

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