RiboParser 0.2.7.8

A pipeline for ribosome profiling data analysis

RiboParser

RiboParser is a modular command-line toolkit for comprehensive RNA-seq and Ribo-seq data analysis.

📖 Documentation | 🐞 Issues | 📚 Citation | 📝 License

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Overview

RiboParser provides an integrated workflow for RNA-seq and ribosome profiling (Ribo-seq) analysis, including reference preparation, raw data preprocessing, alignment, quantification, quality control, RPF density construction, gene-level analysis, codon-level analysis, SeRP analysis, smORF analysis, and downstream visualization with RiboShiny.

The full documentation is available at:

https://renscq.github.io/RiboParser/

Installation

conda install riboparser -c rensc
# or
micromamba install riboparser -c rensc

pip install riboparser

Quick test

riboparser -v
riboparser -c
riboparser -d
riboparser -m

Citation

Ren, S., Li, Y. & Zhou, Z.
RiboParser/RiboShiny: An integrated platform for comprehensive analysis and visualization of ribo-seq data.
Journal of Genetics and Genomics (2025).
DOI: 10.1016/j.jgg.2025.04.010

License

GPL-3.0-or-later.