saintBioutils
Repository containing utility and miscellaneous scripts and functions for use in bioinformatic pipelines, primarily written in Python3.
The name is derived from the primary host organisation (University of St Andrews) when the repo was firsted established.
Table of contents
Installation
Quick and Easy
The easiest way to install saintBioutils and include the (sub)modules and functions is to install the package via pip, using the following command:
pip3 install saintBioutils
This ensures all dependencies are installed
From Source
To install from source, clone the repository:
git clone https://github.com/HobnobMancer/saintBioutils.git
Then install the package, which ensures all dependencies are also installed:
python3 <path to the setup.py file>
Directories
genbank- Scripts for downloading and parsing genomic assemblies from NCBI GenBankuniprot- Scripts and functions related to calling to, retrieving from and parsing data from UniProt and its APIutilities- Script and functions for utility functions for script/program utility operations
Copyright and License
MIT License
Copyright (c) 2020-2021 University of St Andrews
Copyright (c) 2020-2021 University of Strathclyde
Copyright (c) 2020-2021 UJames Hutton Institute
2 maintainers
Metadata
2 maintainers
Release files for saintBioutils 0.0.25
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| saintBioutils-0.0.25.tar.gz | 10.8 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| saintBioutils-0.0.25-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 30.6 kB
Release files / saintBioutils-0.0.25.tar.gz
| Download URL | saintBioutils-0.0.25.tar.gz |
|---|---|
| Size | 10.8 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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No |
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twine/4.0.2 CPython/3.11.0
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Release files / saintBioutils-0.0.25-py3-none-any.whl
| Download URL | saintBioutils-0.0.25-py3-none-any.whl |
|---|---|
| Size | 19.7 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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No |
| Uploaded via |
twine/4.0.2 CPython/3.11.0
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