Last Commont Ancestor on SAM/BAM/CRAM alignment files
Project description
sam2lca
Lowest Common Ancestor from a SAM/BAM/CRAM sequence alignment file
Quick start
sam2lca myfile.bam
Installation
From source
git clone git@github.com:maxibor/sam2lca.git
conda env create -f environment.yml
conda activate sam2lca
pip install git+ssh://git@github.com/maxibor/sam2lca.git
From conda
Will be available on conda upon first release
From Pypi
Will be available on Pypi upon first release
Documentation
The documentation is available here: sam2lca.readthedocs.io
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sam2lca-0.2.tar.gz
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sam2lca-0.2-py3-none-any.whl
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