scDiffEq Analyses
Notebooks, figures, files, and helper functions to reproduce the analyses presented in the scDiffEq manuscript.
Overview
scDiffEq/scdiffeq-analyses/
├── manuscript/
│ ├── figure_1/
│ ├── figure_2/
│ │ ├── figure_files/
│ │ ├── notebooks/
│ │ └── results/
│ ├── figure_3/
│ ...
│ ├── models/
│ └── supplementary_tables/
│
└── scdiffeq_analyses/
Manuscript reproducibility
Notebooks, scripts, and other code to reproduce and/or use:
- Main figures
- Supplementary figures
- Supplementary tables
- Trained model checkpoints
Code and helper functions
These are contained in scdiffeq_analyses/
Installation
git clone https://github.com/scDiffEq/scdiffeq-analyses.git;
cd scdiffeq-analyses; pip install -e .
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