scdiffeq-analyses 0.1.0rc0

Notebooks, figures, files, and helper functions to reproduce the analyses presented in the scDiffEq manuscript.

scDiffEq Analyses

Notebooks, figures, files, and helper functions to reproduce the analyses presented in the scDiffEq manuscript.

Overview

scDiffEq/scdiffeq-analyses/
├── manuscript/
│   ├── figure_1/
│   ├── figure_2/
│   │   ├── figure_files/
│   │   ├── notebooks/
│   │   └── results/
│   ├── figure_3/
│   ...
│   ├── models/
│   └── supplementary_tables/
│
└── scdiffeq_analyses/

Manuscript reproducibility

Notebooks, scripts, and other code to reproduce and/or use:

• Main figures
• Supplementary figures
• Supplementary tables
• Trained model checkpoints

Code and helper functions

These are contained in scdiffeq_analyses/

Installation

git clone https://github.com/scDiffEq/scdiffeq-analyses.git;
cd scdiffeq-analyses; pip install -e .