schemasheets 0.1.13

Package to author schemas using spreadsheets

Schemasheets - make datamodels using spreadsheets

Create a data dictionary / schema for your data using simple spreadsheets - no coding required.

About

Schemasheets is a framework for managing your schema using spreadsheets (Google Sheets, Excel). It works by compiling down to LinkML, which can itself be compiled to a variety of formalisms, or used for different purposes like data validation

• installation
• basics

Documentation

See the Schema Sheets Manual

Quick Start

pip install schemasheets

You should then be able to run the following commands:

• sheets2linkml - Convert schemasheets to a LinkML schema
• linkml2sheets - Convert a LinkML schema to schemasheets
• sheets2project - Generate an entire set of schema files (JSON-Schema, SHACL, SQL, ...) from Schemasheets

As an example, take a look at the different tabs in the google sheet with ID 1wVoaiFg47aT9YWNeRfTZ8tYHN8s8PAuDx5i2HUcDpvQ

The personinfo tab contains the bulk of the metadata elements:

record	field	key	multiplicity	range	desc	schema.org
> class	slot	identifier	cardinality	range	description	exact_mappings: {curie_prefix: sdo}
>
	id	yes	1	string	any identifier	identifier
	description	no	0..1	string	a textual description	description
Person		n/a	n/a	n/a	a person,living or dead	Person
Person	id	yes	1	string	identifier for a person	identifier
Person, Organization	name	no	1	string	full name	name
Person	age	no	0..1	decimal	age in years
Person	gender	no	0..1	decimal	age in years
Person	has medical history	no	0..*	MedicalEvent	medical history
Event					grouping class for events
MedicalEvent		n/a	n/a	n/a	a medical encounter
ForProfit
NonProfit

This demonstrator schema contains both record types (e.g Person, MedicalEvent) as well as fields (e.g. id, age, gender)

You can convert this like this:

sheets2linkml --gsheet-id 1wVoaiFg47aT9YWNeRfTZ8tYHN8s8PAuDx5i2HUcDpvQ personinfo types prefixes -o personinfo.yaml

This will generate a LinkML YAML file personinfo.yaml from 3 of the tabs in the google sheet

You can also work directly with TSVs:

wget https://raw.githubusercontent.com/linkml/schemasheets/main/tests/input/personinfo.tsv 
sheets2linkml personinfo.tsv  -o personinfo.yaml

We recommend using COGS to synchronize your google sheets with local files using a git-like mechanism

Finding out more

• Schema Sheets Manual
  • Specification
  • Internal Datamodel
• linkml/schemasheets code repo
• linkml/linkml main LinkML repo