scikit-digital-health

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Scikit Digital Health (SKDH) is a Python package with methods for ingesting and analyzing wearable inertial sensor data.

Documentation: https://scikit-digital-health.readthedocs.io/en/latest/
Bug reports: https://github.com/PfizerRD/scikit-digital-health/issues
Contributing: https://scikit-digital-health.readthedocs.io/en/latest/src/dev/contributing.html

SKDH provides the following:

Methods for ingesting data from binary file formats (ie Axivity, GeneActiv)
Preprocessing of accelerometer data
Common time-series signal features
Common time-series/inertial data analysis functions
Inertial data analysis algorithms (ie gait, sit-to-stand, sleep, activity)

Availability

SKDH is available on both conda-forge and PyPI.

conda install scikit-digital-health -c conda-forge

pip install scikit-digital-health

[!WARNING] Windows pre-built wheels are provided as-is, with limited/no testing on changes made to compile extensions for Windows.

[!NOTE] Windows users may need to install an additional requirement: Microsoft Visual C++ redistributable >14.0. The 2015 version can be found here: https://www.microsoft.com/en-us/download/details.aspx?id=53587

Build Requirements

As of 0.9.15, Scikit Digital Health is built using Meson.

Examples

An example notebook can be found in the examples folder: SKDH tutorial along with some sample data. The tutorial walks through running individual modules in SKDH, then building up a pipeline, and finally creating a new module.

Citation

If you use SKDH in your research, please include the following citation:

[1] L. Adamowicz, Y. Christakis, M. D. Czech, and T. Adamusiak, “SciKit Digital Health: Python Package for Streamlined Wearable Inertial Sensor Data Processing,” JMIR mHealth and uHealth, vol. 10, no. 4, p. e36762, Apr. 2022, doi: 10.2196/36762.

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scikit-digital-health 0.17.15

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