SCIV

SCIV: Unveiling the pivotal cell types involved in variant function regulation at a single-cell resolution

overview.png

We propose SCIV, a method integrating cell cluster-type correction with a weighted seed-based random walk. By eliminating substantial noise from seed cells, SCIV enables the efficient enrichment of causal variants within cells of interest.

SCIV tutorial: https://sciv.readthedocs.io/en/latest/

Project links

Key dates

PyPI data
Data sourced directly from PyPI's database.
  • Released:
Newer release available (0.0.200)

1 maintainer

PyPI data
Data sourced directly from PyPI's database.
Avatar for yuzhengmin from gravatar.com yuzhengmin

Credits

Author: Zheng-Min Yu

License

MIT License (Copyright (c) 2024 Zheng-Min Yu Permission is hereby granted, free of charge, to any person obtaini...)

Requires

Python >=3.10

Tags

Causal variant Fine-mapping SCIV Single-cell epiomics Trait scATAC-seq

Classifiers

Report project as malware

Metadata

Project links

Key dates

PyPI data
Data sourced directly from PyPI's database.
  • Released:
Newer release available (0.0.200)

1 maintainer

PyPI data
Data sourced directly from PyPI's database.
Avatar for yuzhengmin from gravatar.com yuzhengmin

Credits

Author: Zheng-Min Yu

License

MIT License (Copyright (c) 2024 Zheng-Min Yu Permission is hereby granted, free of charge, to any person obtaini...)

Requires

Python >=3.10

Tags

Causal variant Fine-mapping SCIV Single-cell epiomics Trait scATAC-seq

Classifiers

Report project as malware

Release files for sciv 0.0.197

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

Source distribution (sdist)

Source distribution for sciv 0.0.197
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sciv-0.0.197.tar.gz 119.2 kB Details

Built distribution (wheel)

Table of built distributions (wheels) for sciv 0.0.197
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sciv-0.0.197-py3-none-any.whl 127.0 kB Python 3 none any Details

Total release size: 246.2 kB

Release files / sciv-0.0.197.tar.gz

Download URL sciv-0.0.197.tar.gz
Size 119.2 kB
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Release files / sciv-0.0.197-py3-none-any.whl

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Size 127.0 kB
Tags Python 3
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