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A library to calculate the latent time of scRNA-seq

Project description

scLTNN (single cell latent time neuron network)

Lifecycle:maturing License:GPL pypi-badge bulid:passing Documentation Status

A composite regression neural network for latent timing prediction of single-cell RNA-seq data


For more details, please check out our publication.

Directory structure

├── scltnn                  # Main Python package
├── experiments             # Experiments and case studies
├── scltnn                  # the raw code of scltnn
├── model                   # the pre-model by ANN
├── source                  # Documentation files


The scLTNN package can be installed via pip:

pip install scltnn


Please checkout the documentations and tutorials at

Reproduce results

  1. Follow instructions in data to prepare the necessary data, it can be download at
  2. Follow instructions in experiments for case studies


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