scltnn 0.1.0

A library to calculate the latent time of scRNA-seq

scLTNN (single cell latent time neuron network)

A composite regression neural network for latent timing prediction of single-cell RNA-seq data

For more details, please check out our publication.

Directory structure

.
├── scltnn                  # Main Python package
├── experiments             # Experiments and case studies
├── scltnn                  # the raw code of scltnn
├── model                   # the pre-model by ANN
├── source                  # Documentation files
├── LICENSE
└── README.md

Installation

The scLTNN package can be installed via pip:

pip install scltnn

Usage

Please checkout the documentations and tutorials at scltnn.readthedocs.io.

Reproduce results

1. Follow instructions in data to prepare the necessary data, it can be download at https://figshare.com/articles/dataset/scltnn_data/20383416
2. Follow instructions in experiments for case studies

Contact

• Zehua Zeng ([e-mail])