seqchromloader
seqchromloader aims to provide versatile and ready-to-use writer/loader for applying deep learning to bioinformatics study.
Plan to support dataset formats including:
- webdataset (done)
- tfrecord (x)
Training framework support:
- pytorch dataloader (done)
- pytorch-lightning datamodule (done)
- NVIDIA-DALI (x)
Installation
conda (suggested):
mamba install -c bioconda -c conda-forge seqchromloader
or
conda install -c bioconda -c conda-forge seqchromloader
pip
pip install seqchromloader
Usage
For detailed usage, please refer to documentation
1 maintainer
Metadata
1 maintainer
Release files for seqchromloader 0.12.4
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| seqchromloader-0.12.4.tar.gz | 19.1 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| seqchromloader-0.12.4-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 56.3 kB
Release files / seqchromloader-0.12.4.tar.gz
| Download URL | seqchromloader-0.12.4.tar.gz |
|---|---|
| Size | 19.1 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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Transparency logRelease files / seqchromloader-0.12.4-py3-none-any.whl
| Download URL | seqchromloader-0.12.4-py3-none-any.whl |
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| Size | 37.2 kB |
| Tags | Python 3 |
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Yes |
| Uploaded via |
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