Sequence and chromatin dataloader for deep learning

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  • License: MIT License
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  • Tags dataloder , pytorch , webdataset
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Project description

seqchromloader

seqchromloader aims to provide versatile and ready-to-use writer/loader for applying deep learning to bioinformatics study.

Plan to support dataset formats including:

  • webdataset (done)
  • tfrecord (x)

Training framework support:

  • pytorch dataloader (done)
  • pytorch-lightning datamodule (done)
  • NVIDIA-DALI (x)

Installation

conda (suggested):

mamba install -c bioconda -c conda-forge seqchromloader

or

conda install -c bioconda -c conda-forge seqchromloader

pip

pip install seqchromloader

Usage

For detailed usage, please refer to documentation

Project details

Verified details

These details have been verified by PyPI
Maintainers
Avatar for yztxwd from gravatar.com yztxwd

Unverified details

These details have not been verified by PyPI
Project links
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  • License: MIT License
  • Author:
  • Tags dataloder , pytorch , webdataset
Classifiers

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0.12.4

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