sequdas-qc 1.0.1

Sequence Upload and Data Archiving System

SeqUDAS Quality Control Analysis Component

Setting up a Development Environment

A conda environment.yml file is provided in this repository. It can be used to set up a conda environment as follows:

conda env create -f environment.yml

Once the environment has been create, activate it:

conda activate sequdas-qc

...then install the sequdas_qc codebase into the environment in 'editable' mode

pip install --editable .

You can verify that sequdas-qc is available on the $PATH by invoking the help output as follows:

sequdas-qc -h