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Package for doing various ad-hoc quality control steps from MSK-ACCESS generated FASTQ or BAM files

Project description

# sequence_qc

Package for doing various ad-hoc quality control steps from MSK-ACCESS generated FASTQ or BAM files

[![Build Status](https://travis-ci.com/msk-access/sequence_qc.svg?branch=master)](https://travis-ci.com/msk-access/sequence_qc) [![PyPi](https://img.shields.io/pypi/v/sequence_qc.svg?)](https://pypi.python.org/pypi/sequence_qc) [![Anaconda](https://anaconda.org/ionox0/sequence-qc/badges/version.svg)](https://anaconda.org/ionox0/sequence-qc/)

## Installation

From pypi:

pip install sequence_qc

From conda:

conda install -c ionox0 -c conda-forge -c bioconda sequence-qc

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