Installation

You can install shogen by running:

$ pip install --user shogen

On Linux the executable script can then be found in ~/.local/bin

and on MacOS the script is under /Users/YOURUSERNAME/Library/Python/2.7/bin.

Usage

Typical usage is:

$ shogen.py [options] genomefile metabolismfile catalysationfile queries

Options:
  -h, --help   show this help message and exit
  -k K, --k=K  Number of ranked  shortest genome segments (Default to 5)
  -l L, --l=L  maximum length of a genome segment (Default to 200)

Samples

Sample files for finding functional gene units in e. coli are available here:: genome.txt metabolism.txt catalyze.txt queries.txt

Metadata

Release files for shogen 1.4.3

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Source distribution (sdist)

Source distribution for shogen 1.4.3
File	Size	Uploaded	Provenance
shogen-1.4.3.tar.gz	8.4 kB	Nov 10, 2014	Without provenance	Details

Release files / shogen-1.4.3.tar.gz

Download URL	shogen-1.4.3.tar.gz
Size	8.4 kB
Tags	Source
SHA-256 checksum How to use checksums	`0c51cb4b68fc4d1ab7e7d559ce991074413be1419b4a0f7d0165a0417839b466`
BLAKE2b-256 checksum How to use checksums	`49056d0929b39ab5ebb92c5043fb363fbaca6854c4c89fdcae9f4afb2b257ee6`
Upload date	Nov 10, 2014
Uploaded using Trusted Publishing? What is trusted publishing?	No

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