A lightweight neuromorphological mesh skeletonizer.
Project description
skeliner
A lightweight skeletonizer that converts neuron meshes into biophysical‑modelling‑ready SWC morphologies. It heuristically detects the soma, extracts an acyclic centre‑line skeleton, estimates per‑node radii, and bridges small gaps.
Installation
pip install skeliner
or
git clone https://github.com/berenslab/skeliner.git
pip install -e "skeliner[dev]"
Usage
See example notebooks for usage.
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file skeliner-0.1.3.tar.gz.
File metadata
- Download URL: skeliner-0.1.3.tar.gz
- Upload date:
- Size: 4.7 MB
- Tags: Source
- Uploaded using Trusted Publishing? Yes
- Uploaded via: twine/6.1.0 CPython/3.12.9
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
4ce1d5d40e92a34ce26b5746d09ce172af6cd7b8f833f542e69d6250863fa2ac
|
|
| MD5 |
bb85fe294abb66f48780f613bf9c30df
|
|
| BLAKE2b-256 |
347445ce2e356dc19a9bff9d1152eaa452af6f36d6abf5a2e981964ca86a5032
|
Provenance
The following attestation bundles were made for skeliner-0.1.3.tar.gz:
Publisher:
python-publish.yml on berenslab/skeliner
-
Statement:
-
Statement type:
https://in-toto.io/Statement/v1 -
Predicate type:
https://docs.pypi.org/attestations/publish/v1 -
Subject name:
skeliner-0.1.3.tar.gz -
Subject digest:
4ce1d5d40e92a34ce26b5746d09ce172af6cd7b8f833f542e69d6250863fa2ac - Sigstore transparency entry: 236419087
- Sigstore integration time:
-
Permalink:
berenslab/skeliner@f057e1a0359a5289d9782ed0f0057a7d2b6541f5 -
Branch / Tag:
refs/tags/v0.1.3 - Owner: https://github.com/berenslab
-
Access:
public
-
Token Issuer:
https://token.actions.githubusercontent.com -
Runner Environment:
github-hosted -
Publication workflow:
python-publish.yml@f057e1a0359a5289d9782ed0f0057a7d2b6541f5 -
Trigger Event:
release
-
Statement type:
File details
Details for the file skeliner-0.1.3-py3-none-any.whl.
File metadata
- Download URL: skeliner-0.1.3-py3-none-any.whl
- Upload date:
- Size: 46.1 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? Yes
- Uploaded via: twine/6.1.0 CPython/3.12.9
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
24cea25e678bf27c66871aa3b00f85dcee358af0e3a69ae208c752ad99c21345
|
|
| MD5 |
d5140578d69427439febb1b7da3de859
|
|
| BLAKE2b-256 |
c9dc082f3653e3a403c0a8719ec4c15181985fa66b9af91aca40c3124bbae655
|
Provenance
The following attestation bundles were made for skeliner-0.1.3-py3-none-any.whl:
Publisher:
python-publish.yml on berenslab/skeliner
-
Statement:
-
Statement type:
https://in-toto.io/Statement/v1 -
Predicate type:
https://docs.pypi.org/attestations/publish/v1 -
Subject name:
skeliner-0.1.3-py3-none-any.whl -
Subject digest:
24cea25e678bf27c66871aa3b00f85dcee358af0e3a69ae208c752ad99c21345 - Sigstore transparency entry: 236419090
- Sigstore integration time:
-
Permalink:
berenslab/skeliner@f057e1a0359a5289d9782ed0f0057a7d2b6541f5 -
Branch / Tag:
refs/tags/v0.1.3 - Owner: https://github.com/berenslab
-
Access:
public
-
Token Issuer:
https://token.actions.githubusercontent.com -
Runner Environment:
github-hosted -
Publication workflow:
python-publish.yml@f057e1a0359a5289d9782ed0f0057a7d2b6541f5 -
Trigger Event:
release
-
Statement type:
